3D structure

PDB id
4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
4Y4O|1|2A|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_23481.4
Basepair signature
cWW-tSH-R-R-R
Number of instances in this motif group
7

Unit IDs

4Y4O|1|2A|G|194
4Y4O|1|2A|A|195
4Y4O|1|2A|A|196
4Y4O|1|2A|A|197
4Y4O|1|2A|C|198
4Y4O|1|2A|A|199
4Y4O|1|2A|U|200
4Y4O|1|2A|C|201

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2P
50S ribosomal protein L15

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5202 s