Motif HL_23481.4 Version HL_23481.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_001 | 5TBW | 0.1704 | 1 | 1 | LSU rRNA | U | 38 | A | 39 | G | 41 | C | 42 | A | 43 | U | 44 | A | 45 | cWW | ntSH | ||
| 2 | HL_4V9F_006 | 4V9F | 0.0942 | 1 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | A | 169 | U | 170 | C | 171 | cWW | tSH | ||
| 3 | HL_7A0S_006 | 7A0S | 0.0872 | 1 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | A | 176 | U | 177 | C | 178 | cWW | ntSH | ||
| 4 | HL_4Y4O_108 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH | ||
| 5 | HL_5J7L_139 | 5J7L | 0.0659 | 1 | DA | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH | ||
| 6 | HL_4WF9_006 | 4WF9 | 0.0912 | 1 | X | LSU rRNA | G | 197 | A | 198 | A | 200 | C | 201 | A | 202 | U | 203 | C | 204 | cWW | tSH | ||
| 7 | HL_3DIL_003 | 3DIL | 0.7992 | 0 | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | U | 128 | A | 129 | C | 130 | cWW | tSH | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 5 |
| UAAGCAUA | 1 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 5 |
| AAGCAU | 1 |
| GAAUA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.84
Coloring options: