HL_4Y4O_114

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases (A, C, G, U)

329G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08002.5

Basepair signature

cWW-R-R-tWH-R-R

Number of instances in this motif group

14

Unit IDs

4Y4O|1|2A|G|327
4Y4O|1|2A|U|328
4Y4O|1|2A|G|329
4Y4O|1|2A|A|330
4Y4O|1|2A|A|331
4Y4O|1|2A|A|332
4Y4O|1|2A|G|333
4Y4O|1|2A|C|334
4Y4O|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24