Motif HL_08002.5 Version HL_08002.5 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5		6		7		8	1-8	2-5
1	HL_7A0S_012	7A0S	0.5336	1	T-loop with unstacked turn	X	G	338	U	339	A	341	G	342	A	343	G	344	U	345	C	346	cWW
2	HL_4WF9_012	4WF9	0.3849	1	T-loop with unstacked turn	X	G	370	U	371	A	373	U	374	A	375	A	376	U	377	C	378	cWW	ntWH
3	HL_4FRN_007	4FRN	0.2139	1	T-loop with unstacked turn	B	G	56	U	57	A	59	U	60	A	61	C	62	U	63	C	64	cWW	tWH
4	HL_4FRG_003	4FRG	0.2008	1	T-loop with unstacked turn	B	G	58	U	59	A	61	U	62	A	63	C	64	U	65	C	66	cWW	tWH
5	HL_6DN2_002	6DN2	0.2235	0	T-loop with unstacked turn	X	G	36	U	37	A	38	U	39	A	40	G	41	U	42	C	43	cWW	tWH
6	HL_5C45_002	5C45	0.2042	0	T-loop with unstacked turn	X	G	36	U	37	A	38	U	39	A	40	G	41	U	42	C	43	cWW	tWH
7	HL_3F2X_002	3F2X	0.2054	0	T-loop with unstacked turn	X	G	36	U	37	A	38	U	39	A	40	G	41	U	42	C	43	cWW	tWH
8	HL_6DN2_004	6DN2	0.0000	0	T-loop with unstacked turn	Y	G	88	U	89	A	90	G	91	A	92	G	93	U	94	C	95	cWW	tWH
9	HL_3F2X_005	3F2X	0.0625	0	T-loop with unstacked turn	X	G	88	U	89	A	90	G	91	A	92	G	93	U	94	C	95	cWW	tWH
10	HL_5C45_004	5C45	0.0918	0	T-loop with unstacked turn	Y	G	88	U	89	A	90	G	91	A	92	G	93	U	94	C	95	cWW	tWH
11	HL_5J7L_144	5J7L	0.4930	1	T-loop with unstacked turn	DA	G	327	U	328	A	330	C	331	A	332	G	333	C	334	C	335	cWW	tWH
12	HL_4Y4O_114	4Y4O	0.5547	1	T-loop with unstacked turn	2A	G	327	U	328	A	330	A	331	A	332	G	333	C	334	C	335	cWW	tWH
13	HL_4V9F_012	4V9F	0.6523	1	T-loop with unstacked turn	0	G	334	U	335	A	337	C	338	A	339	A	340	C	341	C	342	cWW	tWH
14	HL_5TBW_007	5TBW	0.6944	1	T-loop with unstacked turn	1	G	216	U	217	A	219	G	220	A	221	A	222	U	223	C	224	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAUAGUC	3
GUAGAGUC	3
GUUAUACUC	2
GUGAGAGUC	1
GUAAUAAUC	1
GUGACAGCC	1
GUGAAAGCC	1
GUGACAACC	1
GUGAGAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAUAGU	3
UAGAGU	3
UUAUACU	2
UGAGAGU	1
UAAUAAU	1
UGACAGC	1
UGAAAGC	1
UGACAAC	1
UGAGAAU	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with unstacked turn (14)
Basepair signature: cWW-R-R-tWH-R-R
Heat map statistics: Min 0.06 | Avg 0.40 | Max 0.76

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Coloring options: Nucleotide numbers

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