HL_4Y4O_125

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4Y4O|1|2A|U|747, 4Y4O|1|2A|A|751, 4Y4O|1|2A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.4

Basepair signature

cWW-tSW-R-R

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2A|G|744
4Y4O|1|2A|G|745
4Y4O|1|2A|A|746
4Y4O|1|2A|U|747
4Y4O|1|2A|G|748
4Y4O|1|2A|C|749
4Y4O|1|2A|A|750
4Y4O|1|2A|A|751
4Y4O|1|2A|A|752
4Y4O|1|2A|C|753

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 27

50S ribosomal protein L34

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22