HL_4Y4O_137

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4Y4O|1|2A|U|1396, 4Y4O|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78457.3

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

6

Unit IDs

4Y4O|1|2A|G|1389
4Y4O|1|2A|U|1390
4Y4O|1|2A|U|1391
4Y4O|1|2A|A|1392
4Y4O|1|2A|A|1393
4Y4O|1|2A|U|1394
4Y4O|1|2A|A|1395
4Y4O|1|2A|U|1396
4Y4O|1|2A|U|1397
4Y4O|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23