Motif HL_78457.3 Version HL_78457.3 of this group appears in releases 3.12 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_035 | 5TBW | 0.4288 | 2 | 1 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
| 2 | HL_4WF9_035 | 4WF9 | 0.1254 | 2 | X | LSU rRNA | G | 1426 | U | 1427 | U | 1428 | G | 1429 | A | 1430 | U | 1431 | A | 1432 | C | 1435 | cWW | tWH |
| 3 | HL_4V9F_037 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH |
| 4 | HL_5J7L_168 | 5J7L | 0.0954 | 2 | DA | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 5 | HL_4Y4O_137 | 4Y4O | 0.1231 | 2 | 2A | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 6 | HL_5X2G_003 | 5X2G | 0.8144 | 1 | B | sgRNA | G | 73 | U | 74 | U | 75 | A | 76 | C | 77 | A | 78 | A | 79 | C | 81 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 3 |
| GUUAAGAUUC | 1 |
| GUUGAUAUUC | 1 |
| GUUACAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 3 |
| UUAAGAUU | 1 |
| UUGAUAUU | 1 |
| UUACAAU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tWH-R-tSH-R
- Heat map statistics
- Min 0.10 | Avg 0.37 | Max 0.88
Coloring options: