3D structure

PDB id
4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
4Y4O|1|2A|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53760.2
Basepair signature
cWW-bif-R-tSH-R
Number of instances in this motif group
10

Unit IDs

4Y4O|1|2A|G|1949
4Y4O|1|2A|G|1950
4Y4O|1|2A|U|1951
4Y4O|1|2A|A|1952
4Y4O|1|2A|A|1953
4Y4O|1|2A|G|1954
4Y4O|1|2A|U|1955
4Y4O|1|2A|U|1956
4Y4O|1|2A|C|1957

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2O
50S ribosomal protein L14
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:

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