HL_4Y4O_153
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4Y4O|1|2A|A|2030, 4Y4O|1|2A|A|2031, 4Y4O|1|2A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.4
- Basepair signature
- cWW-R-R-tWH-R
- Number of instances in this motif group
- 5
Unit IDs
4Y4O|1|2A|G|2027
4Y4O|1|2A|U|2028
4Y4O|1|2A|G|2029
4Y4O|1|2A|A|2030
4Y4O|1|2A|A|2031
4Y4O|1|2A|G|2032
4Y4O|1|2A|A|2033
4Y4O|1|2A|U|2034
4Y4O|1|2A|G|2035
4Y4O|1|2A|C|2036
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2E
- 50S ribosomal protein L3
Coloring options: