Motif HL_90642.4 Version HL_90642.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-4
1	HL_5TBW_051	5TBW	0.3605	3	1	LSU rRNA	G	2369	G	2370	G	2371	G	2375	G	2376	G	2377	C	2378	cWW	tWH
2	HL_4V9F_052	4V9F	0.2381	3	0	LSU rRNA	G	2068	U	2069	G	2070	A	2074	G	2075	U	2076	C	2077	cWW	tWH
3	HL_4Y4O_153	4Y4O	0.0000	3	2A	LSU rRNA	G	2027	U	2028	G	2029	A	2033	U	2034	G	2035	C	2036	cWW	tWH
4	HL_7A0S_049	7A0S	0.1109	3	X	LSU rRNA	G	2010	U	2011	A	2012	A	2016	U	2017	G	2018	C	2019	cWW	tWH
5	HL_4WF9_047	4WF9	0.1576	3	X	LSU rRNA	G	2054	U	2055	G	2056	A	2060	U	2061	G	2062	C	2063	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGAAGAUGC	2
GGGAACGGGC	1
GUGCGGAGUC	1
GUAAAGAUGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAGAUG	2
GGAACGGG	1
UGCGGAGU	1
UAAAGAUG	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-R-R-tWH-R
Heat map statistics: Min 0.11 | Avg 0.22 | Max 0.42

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Coloring options: Nucleotide numbers

Motif HL_90642.4 Version HL_90642.4 of this group appears in releases 3.48 to 3.53 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_90642.4 Version HL_90642.4 of this group appears in releases 3.48 to 3.53

Download

Csv

Json