3D structure

PDB id
4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
4Y4P|1|1A|G|2764, 4Y4P|1|1A|C|2768
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4Y4P_065 not in the Motif Atlas
Homologous match to HL_7RQB_066
Geometric discrepancy: 0.0451
The information below is about HL_7RQB_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.7
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
8

Unit IDs

4Y4P|1|1A|C|2758
4Y4P|1|1A|U|2759
4Y4P|1|1A|G|2760
4Y4P|1|1A|A|2761
4Y4P|1|1A|A|2762
4Y4P|1|1A|A|2763
4Y4P|1|1A|G|2764
4Y4P|1|1A|C|2765
4Y4P|1|1A|A|2766
4Y4P|1|1A|U|2767
4Y4P|1|1A|C|2768
4Y4P|1|1A|U|2769
4Y4P|1|1A|A|2770
4Y4P|1|1A|A|2771
4Y4P|1|1A|G|2772

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6

Coloring options:


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