3D structure

PDB id
4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
4Y4P|1|2A|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4Y4P_129 not in the Motif Atlas
Geometric match to HL_7RQB_018
Geometric discrepancy: 0.0679
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4Y4P|1|2A|U|566
4Y4P|1|2A|A|567
4Y4P|1|2A|U|568
4Y4P|1|2A|U|569
4Y4P|1|2A|G|570
4Y4P|1|2A|A|571
4Y4P|1|2A|A|572
4Y4P|1|2A|G|573
4Y4P|1|2A|C|574
4Y4P|1|2A|A|575

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2E
50S ribosomal protein L3
Chain 2P
50S ribosomal protein L15
Chain 2V
50S ribosomal protein L21

Coloring options:


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