HL_4YBB_075

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4YBB|1|CA|G|386, 4YBB|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_075 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0824

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|CA|A|382
4YBB|1|CA|C|383
4YBB|1|CA|A|384
4YBB|1|CA|C|385
4YBB|1|CA|G|386
4YBB|1|CA|U|387
4YBB|1|CA|G|388
4YBB|1|CA|G|389
4YBB|1|CA|U|390
4YBB|1|CA|A|391
4YBB|1|CA|U|392

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CY

50S ribosomal protein L28