HL_4YBB_139
3D structure
- PDB id
- 4YBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YBB_139 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.0648
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4YBB|1|DA|U|158
4YBB|1|DA|G|159
4YBB|1|DA|A|160
4YBB|1|DA|A|161
4YBB|1|DA|U|162
4YBB|1|DA|C|163
4YBB|1|DA|C|164
4YBB|1|DA|A|165
4YBB|1|DA|U|166
4YBB|1|DA|A|167
4YBB|1|DA|G|168
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DY
- 50S ribosomal protein L28
Coloring options: