HL_4YPB_006

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4YPB|1|QA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0632

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4YPB|1|QA|G|259
4YPB|1|QA|G|260
4YPB|1|QA|U|261
4YPB|1|QA|A|262
4YPB|1|QA|A|263
4YPB|1|QA|U|264
4YPB|1|QA|G|265
4YPB|1|QA|G|266
4YPB|1|QA|C|267

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20