HL_4YPB_105

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4YPB|1|RA|G|2751, 4YPB|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_105 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1372

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4YPB|1|RA|C|2745
4YPB|1|RA|U|2746
4YPB|1|RA|G|2747
4YPB|1|RA|A|2748
4YPB|1|RA|A|2749
4YPB|1|RA|A|2750
4YPB|1|RA|G|2751
4YPB|1|RA|C|2752
4YPB|1|RA|A|2753
4YPB|1|RA|U|2754
4YPB|1|RA|C|2755
4YPB|1|RA|U|2756
4YPB|1|RA|A|2757
4YPB|1|RA|A|2758
4YPB|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13