HL_4YPB_127
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4YPB|1|XA|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_127 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0949
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4YPB|1|XA|G|786
4YPB|1|XA|A|787
4YPB|1|XA|U|788
4YPB|1|XA|U|789
4YPB|1|XA|A|790
4YPB|1|XA|G|791
4YPB|1|XA|A|792
4YPB|1|XA|U|793
4YPB|1|XA|A|794
4YPB|1|XA|C|795
4YPB|1|XA|C|796
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XK
- 30S ribosomal protein S11
- Chain XV
- Transfer RNA; tRNA
- Chain XW
- Transfer RNA; tRNA
- Chain XX
- messenger RNA
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
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