HL_4YPB_170
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4YPB|1|YA|U|747, 4YPB|1|YA|A|751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_170 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.0716
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4YPB|1|YA|G|744
4YPB|1|YA|G|745
4YPB|1|YA|A|746
4YPB|1|YA|U|747
4YPB|1|YA|G|748
4YPB|1|YA|C|749
4YPB|1|YA|A|750
4YPB|1|YA|A|751
4YPB|1|YA|A|752
4YPB|1|YA|C|753
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain Y7
- 50S ribosomal protein L34
- Chain YE
- 50S ribosomal protein L3
- Chain YW
- 50S ribosomal protein L22
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