HL_4YY3_006

3D structure

PDB id

4YY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit- HigB complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4YY3|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YY3_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0818

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4YY3|1|A|G|259
4YY3|1|A|G|260
4YY3|1|A|U|261
4YY3|1|A|A|262
4YY3|1|A|A|263
4YY3|1|A|U|264
4YY3|1|A|G|265
4YY3|1|A|G|266
4YY3|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20