3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
4YZV|1|RA|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_052 not in the Motif Atlas
Homologous match to HL_7RQB_018
Geometric discrepancy: 0.0587
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4YZV|1|RA|U|566
4YZV|1|RA|A|567
4YZV|1|RA|U|568
4YZV|1|RA|U|569
4YZV|1|RA|G|570
4YZV|1|RA|A|571
4YZV|1|RA|A|572
4YZV|1|RA|G|573
4YZV|1|RA|C|574
4YZV|1|RA|A|575

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RP
50S ribosomal protein L15
Chain RV
50S ribosomal protein L21

Coloring options:


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