HL_4YZV_102

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4YZV|1|RA|G|2751, 4YZV|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_102 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1276

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4YZV|1|RA|C|2745
4YZV|1|RA|U|2746
4YZV|1|RA|G|2747
4YZV|1|RA|A|2748
4YZV|1|RA|A|2749
4YZV|1|RA|A|2750
4YZV|1|RA|G|2751
4YZV|1|RA|C|2752
4YZV|1|RA|A|2753
4YZV|1|RA|U|2754
4YZV|1|RA|C|2755
4YZV|1|RA|U|2756
4YZV|1|RA|A|2757
4YZV|1|RA|A|2758
4YZV|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13