3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAUGCAAAC
Length
10 nucleotides
Bulged bases
4YZV|1|YA|U|747, 4YZV|1|YA|A|751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_164 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.0697
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

4YZV|1|YA|G|744
4YZV|1|YA|G|745
4YZV|1|YA|A|746
4YZV|1|YA|U|747
4YZV|1|YA|G|748
4YZV|1|YA|C|749
4YZV|1|YA|A|750
4YZV|1|YA|A|751
4YZV|1|YA|A|752
4YZV|1|YA|C|753

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain Y7
50S ribosomal protein L34
Chain YE
50S ribosomal protein L3
Chain YW
50S ribosomal protein L22

Coloring options:


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