HL_4Z8C_064

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4Z8C|1|1A|G|2763, 4Z8C|1|1A|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_064 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0386

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4Z8C|1|1A|C|2757
4Z8C|1|1A|U|2758
4Z8C|1|1A|G|2759
4Z8C|1|1A|A|2760
4Z8C|1|1A|A|2761
4Z8C|1|1A|A|2762
4Z8C|1|1A|G|2763
4Z8C|1|1A|C|2764
4Z8C|1|1A|A|2765
4Z8C|1|1A|U|2766
4Z8C|1|1A|C|2767
4Z8C|1|1A|U|2768
4Z8C|1|1A|A|2769
4Z8C|1|1A|A|2770
4Z8C|1|1A|G|2771

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6