HL_4ZER_064
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 4ZER|1|1A|G|2764, 4ZER|1|1A|C|2768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4ZER_064 not in the Motif Atlas
- Homologous match to HL_7RQB_066
- Geometric discrepancy: 0.0458
- The information below is about HL_7RQB_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.7
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 8
Unit IDs
4ZER|1|1A|C|2758
4ZER|1|1A|U|2759
4ZER|1|1A|G|2760
4ZER|1|1A|A|2761
4ZER|1|1A|A|2762
4ZER|1|1A|A|2763
4ZER|1|1A|G|2764
4ZER|1|1A|C|2765
4ZER|1|1A|A|2766
4ZER|1|1A|U|2767
4ZER|1|1A|C|2768
4ZER|1|1A|U|2769
4ZER|1|1A|A|2770
4ZER|1|1A|A|2771
4ZER|1|1A|G|2772
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
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