HL_4ZER_149
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4ZER|1|2A|A|1780, 4ZER|1|2A|C|1781, 4ZER|1|2A|C|1782, 4ZER|1|2A|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4ZER_149 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0737
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4ZER|1|2A|U|1777
4ZER|1|2A|U|1778
4ZER|1|2A|U|1779
4ZER|1|2A|A|1780
4ZER|1|2A|C|1781
4ZER|1|2A|C|1782
4ZER|1|2A|A|1783
4ZER|1|2A|A|1784
4ZER|1|2A|A|1785
4ZER|1|2A|A|1786
4ZER|1|2A|A|1787
Current chains
- Chain 2A
- 23s ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2D
- 50S ribosomal protein L2
- Chain 2W
- 50S ribosomal protein L22
- Chain 2y
- Onc112
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