HL_4ZER_181
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4ZER|1|2a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4ZER_181 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0613
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_36455.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4ZER|1|2a|G|259
4ZER|1|2a|G|260
4ZER|1|2a|U|261
4ZER|1|2a|A|262
4ZER|1|2a|A|263
4ZER|1|2a|U|264
4ZER|1|2a|G|265
4ZER|1|2a|G|266
4ZER|1|2a|C|267
Current chains
- Chain 2a
- 16s ribosomal RNA
Nearby chains
- Chain 2q
- 30S ribosomal protein S17
- Chain 2t
- 30S ribosomal protein S20
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