HL_5A8L_002
3D structure
- PDB id
- 5A8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human eRF1 and the hCMV nascent peptide in the translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 5A8L|1|A|A|1965
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5A8L_002 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3408
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5A8L|1|A|C|1959
5A8L|1|A|A|1960
5A8L|1|A|U|1961
5A8L|1|A|G|1962
5A8L|1|A|G|1963
5A8L|1|A|A|1964
5A8L|1|A|A|1965
5A8L|1|A|G|1966
5A8L|1|A|U|1967
5A8L|1|A|C|1968
5A8L|1|A|G|1969
Current chains
- Chain A
- 28S RIBOSOMAL RNA
Nearby chains
- Chain G
- 60S RIBOSOMAL PROTEIN L12
- Chain Q
- EUKARYOTIC RELEASE FACTOR ERF1
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