HL_5A8L_006

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5A8L_006 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1464

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5A8L|1|A|C|4380
5A8L|1|A|G|4381
5A8L|1|A|U|4382
5A8L|1|A|U|4383
5A8L|1|A|C|4384
5A8L|1|A|A|4385
5A8L|1|A|U|4386
5A8L|1|A|A|4387
5A8L|1|A|G|4388

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains

Chain Q

EUKARYOTIC RELEASE FACTOR ERF1