HL_5A9Z_090

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5A9Z|1|BA|G|971||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5A9Z_090 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.3453

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5A9Z|1|BA|G|963||||P_1
5A9Z|1|BA|A|964||||P_1
5A9Z|1|BA|A|965||||P_1
5A9Z|1|BA|G|966||||P_1
5A9Z|1|BA|C|967||||P_1
5A9Z|1|BA|A|968||||P_1
5A9Z|1|BA|A|969||||P_1
5A9Z|1|BA|C|970||||P_1
5A9Z|1|BA|G|971||||P_1
5A9Z|1|BA|C|972||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BM

30S ribosomal protein S9

Chain BN

30S ribosomal protein S10

Chain BQ

30S ribosomal protein S13