HL_5AA0_105
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5AA0|1|BD|C|17||||P_1, 5AA0|1|BD|G|18||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_105 not in the Motif Atlas
- Homologous match to HL_1N78_001
- Geometric discrepancy: 0.564
- The information below is about HL_1N78_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5AA0|1|BD|C|13||||P_1
5AA0|1|BD|A|14||||P_1
5AA0|1|BD|G|15||||P_1
5AA0|1|BD|U|16||||P_1
5AA0|1|BD|C|17||||P_1
5AA0|1|BD|G|18||||P_1
5AA0|1|BD|G|19||||P_1
5AA0|1|BD|U|20||||P_1
5AA0|1|BD|A|21||||P_1
5AA0|1|BD|G|22||||P_1
Current chains
- Chain BD
- tRNA chain 2
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
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