HL_5AFI_086
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5AFI|1|a|U|793||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_086 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0972
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5AFI|1|a|G|786||||P_1
5AFI|1|a|A|787||||P_1
5AFI|1|a|U|788||||P_1
5AFI|1|a|U|789||||P_1
5AFI|1|a|A|790||||P_1
5AFI|1|a|G|791||||P_1
5AFI|1|a|A|792||||P_1
5AFI|1|a|U|793||||P_1
5AFI|1|a|A|794||||P_1
5AFI|1|a|C|795||||P_1
5AFI|1|a|C|796||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
- Chain v
- Transfer RNA; tRNA
- Chain w
- Transfer RNA; tRNA
- Chain x
- mRNA
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