HL_5AJ0_005

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

5AJ0|1|A2|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50880.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|C|199
5AJ0|1|A2|U|200
5AJ0|1|A2|U|201
5AJ0|1|A2|C|202
5AJ0|1|A2|U|203
5AJ0|1|A2|G|204
5AJ0|1|A2|A|205
5AJ0|1|A2|U|206
5AJ0|1|A2|C|207
5AJ0|1|A2|G|208

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AY

60S ribosomal protein L26

Chain Ae

60S ribosomal protein L32