HL_5AJ0_030

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGCCAUGGAAGUCGGAAUC

Length

21 nucleotides

Bulged bases

5AJ0|1|A2|U|1961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00849.1

Basepair signature

cWW-L-R-R-L-L-cWW-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|1954
5AJ0|1|A2|U|1955
5AJ0|1|A2|G|1956
5AJ0|1|A2|G|1957
5AJ0|1|A2|C|1958
5AJ0|1|A2|C|1959
5AJ0|1|A2|A|1960
5AJ0|1|A2|U|1961
5AJ0|1|A2|G|1962
5AJ0|1|A2|G|1963
5AJ0|1|A2|A|1964
5AJ0|1|A2|A|1965
5AJ0|1|A2|G|1966
5AJ0|1|A2|U|1967
5AJ0|1|A2|C|1968
5AJ0|1|A2|G|1969
5AJ0|1|A2|G|1970
5AJ0|1|A2|A|1971
5AJ0|1|A2|A|1972
5AJ0|1|A2|U|1973
5AJ0|1|A2|C|1974

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

60S acidic ribosomal protein P0

Chain Aq

60S ribosomal protein L12