HL_5AJ0_038

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

5AJ0|1|A2|U|2509, 5AJ0|1|A2|C|2510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55197.1

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

15

Unit IDs

5AJ0|1|A2|G|2502
5AJ0|1|A2|U|2503
5AJ0|1|A2|U|2504
5AJ0|1|A2|C|2505
5AJ0|1|A2|A|2506
5AJ0|1|A2|G|2507
5AJ0|1|A2|A|2508
5AJ0|1|A2|U|2509
5AJ0|1|A2|C|2510
5AJ0|1|A2|C|2511

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain AX

60S ribosomal protein L23a

Chain Ag

60S ribosomal protein L34