HL_5AJ0_045

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|C|2773, 5AJ0|1|A2|G|2775, 5AJ0|1|A2|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55724.1

Basepair signature

cWW-R-R

Number of instances in this motif group

18

Unit IDs

5AJ0|1|A2|C|2771
5AJ0|1|A2|G|2772
5AJ0|1|A2|C|2773
5AJ0|1|A2|A|2774
5AJ0|1|A2|G|2775
5AJ0|1|A2|C|2776
5AJ0|1|A2|A|2777
5AJ0|1|A2|G|2778

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AP

60S ribosomal protein L17

Chain Aj

60S ribosomal protein L37

Chain Al

60S ribosomal protein L39

Chain By

Nascent protein chain