HL_5AJ0_054

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5AJ0|1|A2|U|3769, 5AJ0|1|A2|U|3773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79306.1

Basepair signature

cWW-bif-R-tSH-R

Number of instances in this motif group

20

Unit IDs

5AJ0|1|A2|U|3767
5AJ0|1|A2|C|3768
5AJ0|1|A2|U|3769
5AJ0|1|A2|A|3770
5AJ0|1|A2|A|3771
5AJ0|1|A2|U|3772
5AJ0|1|A2|U|3773
5AJ0|1|A2|A|3774
5AJ0|1|A2|G|3775

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L23

Chain B1

Small subunit ribosomal RNA; SSU rRNA