Motif HL_79306.1 Version HL_79306.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9M_042 | 3J9M | 0.8201 | 0 | AA | SSU rRNA | G | 701 | C | 702 | A | 703 | U | 704 | C | 705 | C | 706 | C | 707 | C | 708 | cWW | ncWB | ncSW | |
| 2 | HL_3J79_050 | 3J79 | 0.4753 | 1 | A | LSU rRNA | U | 2585 | C | 2586 | U | 2587 | A | 2588 | A | 2589 | U | 2590 | A | 2592 | G | 2593 | cWW | ncWW | ||
| 3 | HL_3JCS_041 | 3JCS | 0.4341 | 1 | 2 | LSU rRNA | U | 538 | C | 539 | C | 540 | A | 541 | A | 542 | U | 543 | A | 545 | G | 546 | cWW | ncWW | ||
| 4 | HL_5AJ0_054 | 5AJ0 | 0.2952 | 1 | A2 | LSU rRNA | U | 3767 | C | 3768 | U | 3769 | A | 3770 | A | 3771 | U | 3772 | A | 3774 | G | 3775 | cWW | ncWW | ||
| 5 | HL_4V8P_209 | 4V8P | 0.2847 | 1 | F1 | LSU rRNA | U | 2287 | C | 2288 | U | 2289 | A | 2290 | A | 2291 | U | 2292 | A | 2294 | G | 2295 | cWW | ncWW | ||
| 6 | HL_4V88_163 | 4V88 | 0.3020 | 1 | A5 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |||
| 7 | HL_5AN9_011 | 5AN9 | 0.2678 | 1 | N | LSU rRNA | U | 2558 | C | 2559 | U | 2560 | A | 2561 | A | 2562 | U | 2563 | A | 2565 | G | 2566 | cWW | |||
| 8 | HL_4V91_050 | 4V91 | 0.2806 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |||
| 9 | HL_3J7Y_026 | 3J7Y | 0.1617 | 1 | A | LSU rRNA | C | 2612 | U | 2613 | U | 2614 | A | 2615 | A | 2616 | A | 2617 | A | 2619 | G | 2620 | cWW | |||
| 10 | HL_4V19_025 | 4V19 | 0.0000 | 1 | A | LSU rRNA | U | 942 | C | 943 | C | 944 | A | 945 | A | 946 | A | 947 | A | 949 | A | 950 | cWW | ncWW | ||
| 11 | HL_4V9F_051 | 4V9F | 0.2386 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | |||
| 12 | HL_4IOA_047 | 4IOA | 0.2627 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | ||
| 13 | HL_5J7L_182 | 5J7L | 0.2432 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | ||
| 14 | HL_5FDU_048 | 5FDU | 0.2337 | 1 | 1A | LSU rRNA | G | 1971 | G | 1972 | U | 1973 | A | 1974 | A | 1975 | G | 1976 | U | 1978 | C | 1979 | cWW | |||
| 15 | HL_3J9W_085 | 3J9W | 0.2684 | 1 | BA | LSU rRNA | G | 1978 | G | 1979 | U | 1980 | A | 1981 | A | 1982 | G | 1983 | U | 1985 | C | 1986 | cWW | ncWB | ||
| 16 | HL_3J9W_057 | 3J9W | 0.7936 | 0 | BA | LSU rRNA | G | 759 | G | 760 | U | 761 | A | 762 | A | 763 | C | 764 | A | 765 | C | 766 | cWW | tSW | ||
| 17 | HL_4R4V_003 | 4R4V | 0.7157 | 1 | T-loop related | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | ||
| 18 | HL_4R4V_007 | 4R4V | 0.7157 | 1 | A | VS ribozyme RNA | G | 689||||7_556 | U | 690||||7_556 | U | 691||||7_556 | G | 692||||7_556 | A | 693||||7_556 | C | 694||||7_556 | A | 696||||7_556 | C | 697||||7_556 | cWW | |||
| 19 | HL_3J7P_025 | 3J7P | 0.7957 | 1 | 5 | LSU rRNA | U | 1863 | G | 1864 | G | 1865 | U | 1866 | A | 1867 | A | 1868 | C | 1870 | A | 1871 | cWW | ncWW | ||
| 20 | HL_3J7P_047 | 3J7P | 0.9309 | 1 | 5 | LSU rRNA | C | 3667 | C | 3668 | G | 3669 | C | 3670 | G | 3671 | G | 3672 | G | 3674 | G | 3675 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAG | 6 |
| GGUAAGUUC | 4 |
| GUUGACUAC | 2 |
| GCAUCCCC | 1 |
| UCCAAUUAG | 1 |
| CUUAAAUAG | 1 |
| UCCAAAUAA | 1 |
| CAUCAGUAG | 1 |
| GGUAACAC | 1 |
| UGGUAAGCA | 1 |
| CCGCGGCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUA | 6 |
| GUAAGUU | 4 |
| UUGACUA | 2 |
| CAUCCC | 1 |
| CCAAUUA | 1 |
| UUAAAUA | 1 |
| CCAAAUA | 1 |
| AUCAGUA | 1 |
| GUAACA | 1 |
| GGUAAGC | 1 |
| CGCGGCG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (19)
- T-loop related (1)
- Basepair signature
- cWW-bif-R-tSH-R
- Heat map statistics
- Min 0.07 | Avg 0.55 | Max 1.03
Coloring options: