HL_5AJ0_062

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18683.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

6

Unit IDs

5AJ0|1|A2|U|4263
5AJ0|1|A2|U|4264
5AJ0|1|A2|C|4265
5AJ0|1|A2|A|4266
5AJ0|1|A2|G|4267
5AJ0|1|A2|U|4268
5AJ0|1|A2|A|4269
5AJ0|1|A2|C|4270
5AJ0|1|A2|G|4271

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Aa

60S ribosomal protein L27a

Chain Ao

60S ribosomal protein L36a