HL_5AJ0_066

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|G|4437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56406.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

28

Unit IDs

5AJ0|1|A2|A|4436
5AJ0|1|A2|G|4437
5AJ0|1|A2|C|4438
5AJ0|1|A2|A|4439
5AJ0|1|A2|G|4440
5AJ0|1|A2|A|4441
5AJ0|1|A2|A|4442
5AJ0|1|A2|U|4443

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain Am

Ubiquitin-60S ribosomal protein L40