HL_5AJ0_071

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5AJ0|1|A2|G|4656, 5AJ0|1|A2|C|4660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69076.1

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

5AJ0|1|A2|C|4650
5AJ0|1|A2|U|4651
5AJ0|1|A2|G|4652
5AJ0|1|A2|A|4653
5AJ0|1|A2|A|4654
5AJ0|1|A2|C|4655
5AJ0|1|A2|G|4656
5AJ0|1|A2|C|4657
5AJ0|1|A2|C|4658
5AJ0|1|A2|U|4659
5AJ0|1|A2|C|4660
5AJ0|1|A2|U|4661
5AJ0|1|A2|A|4662
5AJ0|1|A2|A|4663
5AJ0|1|A2|G|4664

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain AO

60S ribosomal protein L13a

Chain Am

Ubiquitin-60S ribosomal protein L40