3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUAGACGAC
Length
9 nucleotides
Bulged bases
5AJ0|1|A2|U|4934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_57089.1
Basepair signature
cWW-cSW-R-R-R-R
Number of instances in this motif group
13

Unit IDs

5AJ0|1|A2|G|4933
5AJ0|1|A2|U|4934
5AJ0|1|A2|A|4935
5AJ0|1|A2|G|4936
5AJ0|1|A2|A|4937
5AJ0|1|A2|C|4938
5AJ0|1|A2|G|4939
5AJ0|1|A2|A|4940
5AJ0|1|A2|C|4941

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AP
60S ribosomal protein L17

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.402 s
Application loaded.