HL_5AJ0_076
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5AJ0|1|A3|A|84, 5AJ0|1|A3|U|85, 5AJ0|1|A3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39436.1
- Basepair signature
- cWW-cWW-tSH-tHS-R-R-R-R-R-R-cWW-R-R-R-R-R
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|A3|G|68
5AJ0|1|A3|U|69
5AJ0|1|A3|G|70
5AJ0|1|A3|A|71
5AJ0|1|A3|A|72
5AJ0|1|A3|U|73
5AJ0|1|A3|U|74
5AJ0|1|A3|G|75
5AJ0|1|A3|C|76
5AJ0|1|A3|A|77
5AJ0|1|A3|G|78
5AJ0|1|A3|G|79
5AJ0|1|A3|A|80
5AJ0|1|A3|C|81
5AJ0|1|A3|A|82
5AJ0|1|A3|C|83
5AJ0|1|A3|A|84
5AJ0|1|A3|U|85
5AJ0|1|A3|U|86
5AJ0|1|A3|G|87
5AJ0|1|A3|A|88
5AJ0|1|A3|U|89
5AJ0|1|A3|C|90
Current chains
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26
- Chain Ah
- 60S ribosomal protein L35
- Chain Aj
- 60S ribosomal protein L37
- Chain Al
- 60S ribosomal protein L39
Coloring options: