HL_5AJ0_083

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5AJ0|1|B1|U|160, 5AJ0|1|B1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_083 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3975

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5AJ0|1|B1|G|156
5AJ0|1|B1|U|157
5AJ0|1|B1|A|158
5AJ0|1|B1|A|159
5AJ0|1|B1|U|160
5AJ0|1|B1|U|161
5AJ0|1|B1|C|162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24