HL_5AJ0_084

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_084 not in the Motif Atlas

Geometric match to HL_1KXK_001

Geometric discrepancy: 0.1385

The information below is about HL_1KXK_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5AJ0|1|B1|U|197
5AJ0|1|B1|U|198
5AJ0|1|B1|C|199
5AJ0|1|B1|G|200
5AJ0|1|B1|C|201
5AJ0|1|B1|G|202

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8