HL_5AJ0_089
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- 5AJ0|1|B1|C|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_089 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1347
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5AJ0|1|B1|U|416
5AJ0|1|B1|C|417
5AJ0|1|B1|A|418
5AJ0|1|B1|G|419
5AJ0|1|B1|G|420
5AJ0|1|B1|G|421
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S2
- Chain BJ
- 40S ribosomal protein S9
- Chain BL
- 40S ribosomal protein S11
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
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