HL_5AJ0_090
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5AJ0|1|B1|G|451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_090 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1514
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5AJ0|1|B1|C|441
5AJ0|1|B1|C|442
5AJ0|1|B1|U|443
5AJ0|1|B1|G|444
5AJ0|1|B1|A|445
5AJ0|1|B1|G|446
5AJ0|1|B1|A|447
5AJ0|1|B1|A|448
5AJ0|1|B1|A|449
5AJ0|1|B1|C|450
5AJ0|1|B1|G|451
5AJ0|1|B1|G|452
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4, Y isoform 1
- Chain BG
- 40S ribosomal protein S6
- Chain BI
- 40S ribosomal protein S8
- Chain BY
- 40S ribosomal protein S24
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