HL_5AJ0_092

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

5AJ0|1|B1|A|500, 5AJ0|1|B1|C|502, 5AJ0|1|B1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_092 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5118

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60707.1

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5AJ0|1|B1|C|498
5AJ0|1|B1|G|499
5AJ0|1|B1|A|500
5AJ0|1|B1|C|501
5AJ0|1|B1|C|502
5AJ0|1|B1|C|503
5AJ0|1|B1|G|504

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BY

40S ribosomal protein S24