HL_5AJ0_101
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_101 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1409
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_12326.2
- Basepair signature
- cWW-F-F-tSH-F-F
- Number of instances in this motif group
- 10
Unit IDs
5AJ0|1|B1|A|957
5AJ0|1|B1|G|958
5AJ0|1|B1|G|959
5AJ0|1|B1|U|960
5AJ0|1|B1|G|961
5AJ0|1|B1|A|962
5AJ0|1|B1|A|963
5AJ0|1|B1|A|964
5AJ0|1|B1|U|965
5AJ0|1|B1|U|966
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BF
- 40S ribosomal protein S5
- Chain BO
- 40S ribosomal protein S14
- Chain Bw
- Transfer RNA; tRNA
- Chain Bx
- mRNA
Coloring options: