HL_5AJ0_107
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 5AJ0|1|B1|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_107 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1703
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AJ0|1|B1|G|1245
5AJ0|1|B1|A|1246
5AJ0|1|B1|C|1247
5AJ0|1|B1|U|1248
5AJ0|1|B1|C|1249
5AJ0|1|B1|A|1250
5AJ0|1|B1|A|1251
5AJ0|1|B1|C|1252
5AJ0|1|B1|A|1253
5AJ0|1|B1|C|1254
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16
- Chain BS
- 40S ribosomal protein S18
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29
- Chain Bf
- Ubiquitin-40S ribosomal protein S27a
- Chain Bv
- Transfer RNA; tRNA
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