HL_5AJ0_113

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_113 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2699

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5AJ0|1|B1|C|1565
5AJ0|1|B1|G|1566
5AJ0|1|B1|G|1567
5AJ0|1|B1|C|1568
5AJ0|1|B1|A|1569
5AJ0|1|B1|G|1570

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19